PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00174.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 155aa    MW: 17309.8 Da    PI: 10.1903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00174.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-173382255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+G+r +k +g+WvAeIr+p   +kr r +lg++ ta+ Aa+a++ a  +l+g
  Rsa1.0_00174.1_g00016.1 33 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTADAAARAYDTAVFYLRG 82
                             69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-213391IPR016177DNA-binding domain
SMARTSM003802.2E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103222.8793390IPR001471AP2/ERF domain
PRINTSPR003672.5E-93445IPR001471AP2/ERF domain
PfamPF008475.4E-113482IPR001471AP2/ERF domain
CDDcd000186.37E-273492No hitNo description
Gene3DG3DSA:3.30.730.107.9E-313491IPR001471AP2/ERF domain
PRINTSPR003672.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEGELQQEPC RRKRRQPPQE KEDTHVATRP LKPYRGIRMR KWGKWVAEIR EPNKRSRLWL  60
GSYTTADAAA RAYDTAVFYL RGPSARLNFP DLLFQEEGQR SAAAAAVDMP ASLIREKAAE  120
VGARVDALLA CSAKSPSPPS PVLVEKPDLN QIPGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-163290463ATERF1
3gcc_A3e-163290463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665937.17e-98PREDICTED: ethylene-responsive transcription factor RAP2-1-like
RefseqXP_009107439.17e-98PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC301e-72RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLM4DC447e-98M4DC44_BRARP; Uncharacterized protein
STRINGBra014056.1-P2e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-60related to AP2 1